AMAP

Protein multiple alignment by sequence annealing

Alignment web server
The web server allows for the submission of protein sequences in multi-fasta format, and returns multiple alignments made with AMAP. AMAP can also be used from within the STRAP package.

Download AMAP
The AMAP software is available under the Gnu Public License.

Movie
Starring four protein sequences. Produced and Directed by Ariel Schwartz and Lior Pachter.

Description of AMAP
A.S. Schwartz and L. Pachter, Multiple Alignment by Sequence Annealing, Bioinformatics 23 (2007), e24–e29. (Best paper award ECCB 2006).