MAVID alignment of the SARS virus with other coronaviruses

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Neighbor joining tree with the ATV applet
Neighbor joining (gaps excluded) tree with the ATV applet
Max. Likelihood tree with the ATV applet
Vista plots of pairwise alignments extracted from the multiple alignment

Download

Submitted sequence file
MAVID.mfa, alignment in multi-FASTA format
MAVID.phy, alignment in PHYLIP format
Neighbor joining tree in Newick format

If you have questions or comments please email Nicolas Bray and Lior Pachter